J5_4V7L_014

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACGAAAAGACC*GGAUAACA*UCGAUGUCGGCUC*GCGAGCUGGGUUCAG*CGGUCUCUAUC

Length

59 nucleotides

Bulged bases

4V7L|1|DA|C|2055, 4V7L|1|DA|A|2062, 4V7L|1|DA|A|2448, 4V7L|1|DA|U|2449, 4V7L|1|DA|U|2609, 4V7L|1|DA|C|2612, 4V7L|1|DA|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7L|1|DA|G|2053
4V7L|1|DA|A|2054
4V7L|1|DA|C|2055
4V7L|1|DA|G|2056
4V7L|1|DA|A|2057
4V7L|1|DA|A|2058
4V7L|1|DA|A|2059
4V7L|1|DA|A|2060
4V7L|1|DA|G|2061
4V7L|1|DA|A|2062
4V7L|1|DA|C|2063
4V7L|1|DA|C|2064
*
4V7L|1|DA|G|2446
4V7L|1|DA|G|2447
4V7L|1|DA|A|2448
4V7L|1|DA|U|2449
4V7L|1|DA|A|2450
4V7L|1|DA|A|2451
4V7L|1|DA|C|2452
4V7L|1|DA|A|2453
*
4V7L|1|DA|U|2500
4V7L|1|DA|C|2501
4V7L|1|DA|G|2502
4V7L|1|DA|A|2503
4V7L|1|DA|U|2504
4V7L|1|DA|G|2505
4V7L|1|DA|U|2506
4V7L|1|DA|C|2507
4V7L|1|DA|G|2508
4V7L|1|DA|G|2509
4V7L|1|DA|C|2510
4V7L|1|DA|U|2511
4V7L|1|DA|C|2512
*
4V7L|1|DA|G|2574
4V7L|1|DA|C|2575
4V7L|1|DA|G|2576
4V7L|1|DA|A|2577
4V7L|1|DA|G|2578
4V7L|1|DA|C|2579
4V7L|1|DA|U|2580
4V7L|1|DA|G|2581
4V7L|1|DA|G|2582
4V7L|1|DA|G|2583
4V7L|1|DA|U|2584
4V7L|1|DA|U|2585
4V7L|1|DA|C|2586
4V7L|1|DA|A|2587
4V7L|1|DA|G|2588
*
4V7L|1|DA|C|2606
4V7L|1|DA|G|2607
4V7L|1|DA|G|2608
4V7L|1|DA|U|2609
4V7L|1|DA|C|2610
4V7L|1|DA|U|2611
4V7L|1|DA|C|2612
4V7L|1|DA|U|2613
4V7L|1|DA|A|2614
4V7L|1|DA|U|2615
4V7L|1|DA|C|2616

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain CX

Transfer RNA; tRNA

Chain D0

50S ribosomal protein L27

Chain D5

50S ribosomal protein L32

Chain DD

50S ribosomal protein L2

Chain DE

50S ribosomal protein L3

Chain DF

50S ribosomal protein L4

Chain DQ

50S ribosomal protein L16

Chain DW

50S ribosomal protein L22