J5_4V7P_007

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

4V7P|1|BA|G|1758, 4V7P|1|BA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7P_007 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.1817

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V7P|1|BA|G|1674
4V7P|1|BA|C|1675
4V7P|1|BA|A|1676
4V7P|1|BA|A|1677
4V7P|1|BA|G|1678
4V7P|1|BA|U|1679
4V7P|1|BA|U|1680
4V7P|1|BA|G|1681
4V7P|1|BA|G|1682
*
4V7P|1|BA|U|1706
4V7P|1|BA|G|1707
*
4V7P|1|BA|C|1751
4V7P|1|BA|C|1752
*
4V7P|1|BA|G|1756
4V7P|1|BA|U|1757
4V7P|1|BA|G|1758
4V7P|1|BA|A|1759
4V7P|1|BA|A|1760
4V7P|1|BA|C|1761
4V7P|1|BA|A|1762
4V7P|1|BA|G|1763
4V7P|1|BA|G|1764
*
4V7P|1|BA|C|1988
4V7P|1|BA|G|1989
4V7P|1|BA|C|1990

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19