J5_4V7T_017

3D structure

PDB id

4V7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

ACUAGGCAAAAUGG*CG*UC*GAUACCAGC*GGCUGU

Length

33 nucleotides

Bulged bases

4V7T|1|DA|U|1758, 4V7T|1|DA|G|1763, 4V7T|1|DA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7T|1|DA|A|1669
4V7T|1|DA|C|1670
4V7T|1|DA|U|1671
4V7T|1|DA|A|1672
4V7T|1|DA|G|1673
4V7T|1|DA|G|1674
4V7T|1|DA|C|1675
4V7T|1|DA|A|1676
4V7T|1|DA|A|1677
4V7T|1|DA|A|1678
4V7T|1|DA|A|1679
4V7T|1|DA|U|1680
4V7T|1|DA|G|1681
4V7T|1|DA|G|1682
*
4V7T|1|DA|C|1706
4V7T|1|DA|G|1707
*
4V7T|1|DA|U|1751
4V7T|1|DA|C|1752
*
4V7T|1|DA|G|1756
4V7T|1|DA|A|1757
4V7T|1|DA|U|1758
4V7T|1|DA|A|1759
4V7T|1|DA|C|1760
4V7T|1|DA|C|1761
4V7T|1|DA|A|1762
4V7T|1|DA|G|1763
4V7T|1|DA|C|1764
*
4V7T|1|DA|G|1988
4V7T|1|DA|G|1989
4V7T|1|DA|C|1990
4V7T|1|DA|U|1991
4V7T|1|DA|G|1992
4V7T|1|DA|U|1993

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L14

Chain DP

50S ribosomal protein L19