J5_4V7U_008

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

4V7U|1|BA|A|2062, 4V7U|1|BA|A|2448, 4V7U|1|BA|U|2449, 4V7U|1|BA|U|2585, 4V7U|1|BA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7U|1|BA|G|2057
4V7U|1|BA|A|2058
4V7U|1|BA|A|2059
4V7U|1|BA|A|2060
4V7U|1|BA|G|2061
4V7U|1|BA|A|2062
4V7U|1|BA|C|2063
4V7U|1|BA|C|2064
*
4V7U|1|BA|G|2446
4V7U|1|BA|G|2447
4V7U|1|BA|A|2448
4V7U|1|BA|U|2449
4V7U|1|BA|A|2450
4V7U|1|BA|A|2451
4V7U|1|BA|C|2452
4V7U|1|BA|A|2453
*
4V7U|1|BA|U|2500
4V7U|1|BA|C|2501
4V7U|1|BA|G|2502
4V7U|1|BA|A|2503
4V7U|1|BA|U|2504
4V7U|1|BA|G|2505
4V7U|1|BA|U|2506
*
4V7U|1|BA|G|2583
4V7U|1|BA|U|2584
4V7U|1|BA|U|2585
4V7U|1|BA|U|2586
4V7U|1|BA|A|2587
4V7U|1|BA|G|2588
*
4V7U|1|BA|C|2606
4V7U|1|BA|G|2607
4V7U|1|BA|G|2608
4V7U|1|BA|U|2609
4V7U|1|BA|C|2610
4V7U|1|BA|C|2611

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BC

50S ribosomal protein L2

Chain BD

50S ribosomal protein L3

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15

Chain BM

50S ribosomal protein L16

Chain BS

50S ribosomal protein L22