J5_4V7W_008

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

4V7W|1|BA|A|2062, 4V7W|1|BA|A|2448, 4V7W|1|BA|U|2449, 4V7W|1|BA|U|2585, 4V7W|1|BA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7W|1|BA|A|2057
4V7W|1|BA|A|2058
4V7W|1|BA|A|2059
4V7W|1|BA|A|2060
4V7W|1|BA|G|2061
4V7W|1|BA|A|2062
4V7W|1|BA|C|2063
4V7W|1|BA|C|2064
*
4V7W|1|BA|G|2446
4V7W|1|BA|G|2447
4V7W|1|BA|A|2448
4V7W|1|BA|U|2449
4V7W|1|BA|A|2450
4V7W|1|BA|A|2451
4V7W|1|BA|C|2452
4V7W|1|BA|A|2453
*
4V7W|1|BA|U|2500
4V7W|1|BA|C|2501
4V7W|1|BA|G|2502
4V7W|1|BA|A|2503
4V7W|1|BA|U|2504
4V7W|1|BA|G|2505
4V7W|1|BA|U|2506
4V7W|1|BA|C|2507
*
4V7W|1|BA|G|2582
4V7W|1|BA|G|2583
4V7W|1|BA|U|2584
4V7W|1|BA|U|2585
4V7W|1|BA|C|2586
4V7W|1|BA|A|2587
4V7W|1|BA|G|2588
*
4V7W|1|BA|C|2606
4V7W|1|BA|G|2607
4V7W|1|BA|G|2608
4V7W|1|BA|U|2609
4V7W|1|BA|C|2610
4V7W|1|BA|U|2611

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain B5

50S ribosomal protein L32

Chain BD

50S ribosomal protein L2

Chain BE

50S ribosomal protein L3

Chain BF

50S ribosomal protein L4

Chain BW

50S ribosomal protein L22