J5_4V7W_013

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAAC*GGGUCGG*CGAGUAC*GGAAUCUG*UAAG

Length

32 nucleotides

Bulged bases

4V7W|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7W|1|DA|C|268
4V7W|1|DA|U|269
4V7W|1|DA|A|270
4V7W|1|DA|A|271
4V7W|1|DA|A|271|||A
4V7W|1|DA|C|271|||B
*
4V7W|1|DA|G|271|||V
4V7W|1|DA|G|271|||W
4V7W|1|DA|G|271|||X
4V7W|1|DA|U|271|||Y
4V7W|1|DA|C|271|||Z
4V7W|1|DA|G|272
4V7W|1|DA|G|272|||B
*
4V7W|1|DA|C|366
4V7W|1|DA|G|370
4V7W|1|DA|A|371
4V7W|1|DA|G|372
4V7W|1|DA|U|373
4V7W|1|DA|A|374
4V7W|1|DA|C|375
*
4V7W|1|DA|G|399
4V7W|1|DA|G|400
4V7W|1|DA|A|401
4V7W|1|DA|A|402
4V7W|1|DA|U|403
4V7W|1|DA|C|404
4V7W|1|DA|U|405
4V7W|1|DA|G|406
*
4V7W|1|DA|U|421
4V7W|1|DA|A|422
4V7W|1|DA|A|423
4V7W|1|DA|G|424

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DI

50S ribosomal protein L9