J5_4V84_013

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V84|1|DA|U|271|||D, 4V84|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|DA|C|268
4V84|1|DA|U|269
4V84|1|DA|A|270|||A
4V84|1|DA|A|270|||B
4V84|1|DA|A|270|||C
4V84|1|DA|C|270|||D
*
4V84|1|DA|G|270|||X
4V84|1|DA|G|270|||Y
4V84|1|DA|G|270|||Z
4V84|1|DA|U|271|||A
4V84|1|DA|C|271|||B
4V84|1|DA|G|271|||C
4V84|1|DA|U|271|||D
4V84|1|DA|G|271
*
4V84|1|DA|C|366|||B
4V84|1|DA|G|370
4V84|1|DA|A|371
4V84|1|DA|G|372
4V84|1|DA|U|373
4V84|1|DA|A|374
4V84|1|DA|C|375
*
4V84|1|DA|G|399
4V84|1|DA|G|400
4V84|1|DA|A|401
4V84|1|DA|A|402
4V84|1|DA|U|403
4V84|1|DA|C|404
4V84|1|DA|U|405
4V84|1|DA|G|406
*
4V84|1|DA|U|421
4V84|1|DA|A|422
4V84|1|DA|A|423
4V84|1|DA|G|424

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DH

50S ribosomal protein L9

Chain DX

50S ribosomal protein L28