J5_4V84_017

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

4V84|1|DA|A|2062, 4V84|1|DA|A|2448, 4V84|1|DA|U|2585, 4V84|1|DA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|DA|A|2057
4V84|1|DA|A|2058
4V84|1|DA|A|2059
4V84|1|DA|A|2060
4V84|1|DA|G|2061
4V84|1|DA|A|2062
4V84|1|DA|C|2063
4V84|1|DA|C|2064
*
4V84|1|DA|G|2446
4V84|1|DA|G|2447
4V84|1|DA|A|2448
4V84|1|DA|U|2449
4V84|1|DA|A|2450
4V84|1|DA|A|2451
4V84|1|DA|C|2452
4V84|1|DA|A|2453
*
4V84|1|DA|U|2500
4V84|1|DA|C|2501
4V84|1|DA|G|2502
4V84|1|DA|A|2503
4V84|1|DA|U|2504
4V84|1|DA|G|2505
4V84|1|DA|U|2506
4V84|1|DA|C|2507
*
4V84|1|DA|G|2582
4V84|1|DA|G|2583
4V84|1|DA|U|2584
4V84|1|DA|U|2585
4V84|1|DA|C|2586
4V84|1|DA|A|2587
4V84|1|DA|G|2588
*
4V84|1|DA|C|2606
4V84|1|DA|G|2607
4V84|1|DA|G|2608
4V84|1|DA|U|2609
4V84|1|DA|C|2610
4V84|1|DA|U|2611

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L32

Chain DC

50S ribosomal protein L2

Chain DD

50S ribosomal protein L3

Chain DE

50S ribosomal protein L4

Chain DS

50S ribosomal protein L22