J5_4V87_002

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V87|1|AA|U|271|||C, 4V87|1|AA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V87|1|AA|C|268
4V87|1|AA|U|269
4V87|1|AA|A|270
4V87|1|AA|A|270|||A
4V87|1|AA|A|270|||B
4V87|1|AA|C|270|||C
*
4V87|1|AA|G|270|||W
4V87|1|AA|G|270|||X
4V87|1|AA|G|270|||Y
4V87|1|AA|U|270|||Z
4V87|1|AA|C|271|||A
4V87|1|AA|G|271|||B
4V87|1|AA|U|271|||C
4V87|1|AA|G|271
*
4V87|1|AA|C|366
4V87|1|AA|G|370
4V87|1|AA|A|371
4V87|1|AA|G|372
4V87|1|AA|U|373
4V87|1|AA|A|374
4V87|1|AA|C|375
*
4V87|1|AA|G|399
4V87|1|AA|G|400
4V87|1|AA|A|401
4V87|1|AA|A|402
4V87|1|AA|U|403
4V87|1|AA|C|404
4V87|1|AA|U|405
4V87|1|AA|G|406
*
4V87|1|AA|U|421
4V87|1|AA|A|422
4V87|1|AA|A|423
4V87|1|AA|G|424

Current chains

Chain AA

RNA (2909-MER)

Nearby chains

Chain AK

50S ribosomal protein L9

Chain AZ

50S ribosomal protein L28