J5_4V87_019

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAAC*GAAAAG

Length

26 nucleotides

Bulged bases

4V87|1|DA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V87|1|DA|C|601
4V87|1|DA|G|602
4V87|1|DA|A|603
4V87|1|DA|G|604
*
4V87|1|DA|C|624
4V87|1|DA|G|625
4V87|1|DA|U|626
4V87|1|DA|A|627
4V87|1|DA|G|628
*
4V87|1|DA|C|635
4V87|1|DA|G|636
4V87|1|DA|A|637
4V87|1|DA|G|638
*
4V87|1|DA|C|650
4V87|1|DA|G|651
4V87|1|DA|C|652
4V87|1|DA|A|653
4V87|1|DA|A|654
4V87|1|DA|A|654|||A
4V87|1|DA|C|654|||B
*
4V87|1|DA|G|654|||S
4V87|1|DA|A|654|||T
4V87|1|DA|A|654|||U
4V87|1|DA|A|654|||V
4V87|1|DA|A|655
4V87|1|DA|G|656

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DF

50S ribosomal protein L4

Chain DO

50S ribosomal protein L15