J5_4V87_021

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

4V87|1|DA|A|2062, 4V87|1|DA|A|2448, 4V87|1|DA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V87|1|DA|A|2057
4V87|1|DA|A|2058
4V87|1|DA|A|2059
4V87|1|DA|A|2060
4V87|1|DA|G|2061
4V87|1|DA|A|2062
4V87|1|DA|C|2063
4V87|1|DA|C|2064
*
4V87|1|DA|G|2446
4V87|1|DA|G|2447
4V87|1|DA|A|2448
4V87|1|DA|U|2449
4V87|1|DA|A|2450
4V87|1|DA|A|2451
4V87|1|DA|C|2452
4V87|1|DA|A|2453
*
4V87|1|DA|U|2500
4V87|1|DA|C|2501
4V87|1|DA|G|2502
4V87|1|DA|A|2503
4V87|1|DA|U|2504
4V87|1|DA|G|2505
4V87|1|DA|U|2506
4V87|1|DA|C|2507
*
4V87|1|DA|G|2582
4V87|1|DA|G|2583
4V87|1|DA|U|2584
4V87|1|DA|U|2585
4V87|1|DA|C|2586
4V87|1|DA|A|2587
4V87|1|DA|G|2588
*
4V87|1|DA|C|2606
4V87|1|DA|G|2607
4V87|1|DA|G|2608
4V87|1|DA|U|2609
4V87|1|DA|C|2610
4V87|1|DA|U|2611

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain CC

Transfer RNA; tRNA

Chain D5

50S ribosomal protein L32

Chain DD

50S ribosomal protein L2

Chain DE

50S ribosomal protein L3

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L16

Chain DS

50S ribosomal protein L22