J5_4V87_023

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGG*CGC*GUG*CUUA*UC

Length

16 nucleotides

Bulged bases

4V87|1|CB|U|8, 4V87|1|CB|G|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V87_023 not in the Motif Atlas

Homologous match to J5_3ZGZ_001

Geometric discrepancy: 0.2881

The information below is about J5_3ZGZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_20390.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V87|1|CB|G|7
4V87|1|CB|U|8
4V87|1|CB|G|9
4V87|1|CB|G|10
*
4V87|1|CB|C|26
4V87|1|CB|G|27
4V87|1|CB|C|28
*
4V87|1|CB|G|44
4V87|1|CB|U|45
4V87|1|CB|G|46
*
4V87|1|CB|C|57
4V87|1|CB|U|58
4V87|1|CB|U|59
4V87|1|CB|A|60
*
4V87|1|CB|U|76
4V87|1|CB|C|77

Current chains

Chain CB

TRNA-LEU

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA