J5_4V88_001
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 4V88|1|A4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V88_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0444
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V88|1|A1|A|20
4V88|1|A1|G|21
4V88|1|A1|G|22
*
4V88|1|A4|C|35
4V88|1|A4|G|36
4V88|1|A4|A|37
4V88|1|A4|U|38
4V88|1|A4|G|39
4V88|1|A4|A|40
4V88|1|A4|A|41
4V88|1|A4|G|42
*
4V88|1|A4|U|102
4V88|1|A4|G|103
4V88|1|A4|A|104
4V88|1|A4|A|105
4V88|1|A4|C|106
4V88|1|A4|G|107
*
4V88|1|A4|C|115
4V88|1|A4|G|116
*
4V88|1|A4|C|137
4V88|1|A4|A|138
4V88|1|A4|U|139
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain BN
- 60S ribosomal protein L15-A
- Chain BX
- 60S ribosomal protein L25
- Chain Bh
- 60S ribosomal protein L35-A
- Chain Bj
- 60S ribosomal protein L37-A
- Chain Bl
- 60S ribosomal protein L39
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