J5_4V88_007

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

4V88|1|A2|A|541, 4V88|1|A2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V88|1|A2|C|31
4V88|1|A2|U|32
4V88|1|A2|U|33
4V88|1|A2|G|34
4V88|1|A2|U|35
*
4V88|1|A2|A|473
4V88|1|A2|A|474
4V88|1|A2|A|475
4V88|1|A2|U|476
4V88|1|A2|A|477
4V88|1|A2|A|478
4V88|1|A2|C|479
*
4V88|1|A2|G|509
4V88|1|A2|G|510
4V88|1|A2|A|511
4V88|1|A2|A|512
4V88|1|A2|U|513
4V88|1|A2|G|514
4V88|1|A2|A|515
4V88|1|A2|G|516
*
4V88|1|A2|C|536
4V88|1|A2|G|537
4V88|1|A2|A|538
4V88|1|A2|G|539
4V88|1|A2|G|540
4V88|1|A2|A|541
4V88|1|A2|A|542
4V88|1|A2|C|543
4V88|1|A2|A|544
4V88|1|A2|A|545
4V88|1|A2|U|546
*
4V88|1|A2|A|592
4V88|1|A2|U|593
4V88|1|A2|A|594
4V88|1|A2|G|595

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AJ

40S ribosomal protein S9-A

Chain AX

40S ribosomal protein S23-A

Chain Ae

40S ribosomal protein S30-A