J5_4V88_010

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

4V88|1|A2|U|128, 4V88|1|A2|U|132, 4V88|1|A2|C|136, 4V88|1|A2|U|137, 4V88|1|A2|A|140, 4V88|1|A2|U|141, 4V88|1|A2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V88|1|A2|A|124
4V88|1|A2|U|125
4V88|1|A2|A|126
4V88|1|A2|G|127
4V88|1|A2|U|128
4V88|1|A2|U|129
4V88|1|A2|C|130
4V88|1|A2|C|131
4V88|1|A2|U|132
4V88|1|A2|U|133
4V88|1|A2|U|134
4V88|1|A2|A|135
4V88|1|A2|C|136
4V88|1|A2|U|137
4V88|1|A2|A|138
4V88|1|A2|C|139
4V88|1|A2|A|140
4V88|1|A2|U|141
4V88|1|A2|G|142
4V88|1|A2|G|143
*
4V88|1|A2|C|172
4V88|1|A2|A|173
4V88|1|A2|U|174
4V88|1|A2|G|175
4V88|1|A2|C|176
4V88|1|A2|U|177
4V88|1|A2|U|178
4V88|1|A2|A|179
4V88|1|A2|A|180
4V88|1|A2|A|181
4V88|1|A2|A|182
*
4V88|1|A2|U|203
4V88|1|A2|G|204
*
4V88|1|A2|C|263
4V88|1|A2|G|264
4V88|1|A2|A|265
4V88|1|A2|A|266
4V88|1|A2|U|267
*
4V88|1|A2|A|288
4V88|1|A2|U|289
4V88|1|A2|G|290
4V88|1|A2|G|291
4V88|1|A2|U|292
4V88|1|A2|U|293

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AG

40S ribosomal protein S6-A

Chain AI

40S ribosomal protein S8-A