J5_4V88_016

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU

Length

38 nucleotides

Bulged bases

4V88|1|A5|A|2401, 4V88|1|A5|A|2817, 4V88|1|A5|G|2874, 4V88|1|A5|U|2978, 4V88|1|A5|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V88|1|A5|A|2399
4V88|1|A5|G|2400
4V88|1|A5|A|2401
4V88|1|A5|A|2402
4V88|1|A5|G|2403
4V88|1|A5|A|2404
4V88|1|A5|C|2405
4V88|1|A5|C|2406
*
4V88|1|A5|G|2815
4V88|1|A5|G|2816
4V88|1|A5|A|2817
4V88|1|A5|U|2818
4V88|1|A5|A|2819
4V88|1|A5|A|2820
4V88|1|A5|C|2821
4V88|1|A5|U|2822
4V88|1|A5|G|2823
*
4V88|1|A5|C|2867
4V88|1|A5|U|2868
4V88|1|A5|U|2869
4V88|1|A5|C|2870
4V88|1|A5|G|2871
4V88|1|A5|A|2872
4V88|1|A5|U|2873
4V88|1|A5|G|2874
4V88|1|A5|U|2875
*
4V88|1|A5|G|2952
4V88|1|A5|U|2953
4V88|1|A5|U|2954
4V88|1|A5|U|2955
4V88|1|A5|A|2956
4V88|1|A5|G|2957
*
4V88|1|A5|U|2975
4V88|1|A5|A|2976
4V88|1|A5|G|2977
4V88|1|A5|U|2978
4V88|1|A5|U|2979
4V88|1|A5|U|2980

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DA

60S ribosomal protein L2-A

Chain DB

60S ribosomal protein L3

Chain DC

60S ribosomal protein L4-A

Chain DP

60S ribosomal protein L17-A

Chain Db

60S ribosomal protein L29