J5_4V88_019
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4V88|1|A6|A|93, 4V88|1|A6|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.3
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V88|1|A6|C|54
4V88|1|A6|A|55
4V88|1|A6|U|56
4V88|1|A6|G|57
*
4V88|1|A6|C|90
4V88|1|A6|G|91
4V88|1|A6|A|92
4V88|1|A6|A|93
4V88|1|A6|U|94
4V88|1|A6|G|95
4V88|1|A6|G|96
4V88|1|A6|C|97
*
4V88|1|A6|G|386
4V88|1|A6|A|387
4V88|1|A6|G|388
*
4V88|1|A6|C|409
4V88|1|A6|A|410
4V88|1|A6|C|411
*
4V88|1|A6|G|422
4V88|1|A6|G|423
4V88|1|A6|C|424
4V88|1|A6|A|425
4V88|1|A6|G|426
Current chains
- Chain A6
- 18S rRNA
Nearby chains
- Chain CE
- 40S ribosomal protein S4-A
- Chain CG
- 40S ribosomal protein S6-A
- Chain CI
- 40S ribosomal protein S8-A
- Chain CJ
- 40S ribosomal protein S9-A
- Chain CY
- 40S ribosomal protein S24-A
- Chain DV
- 60S ribosomal protein L23-A
Coloring options: