J5_4V88_020

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

4V88|1|A6|U|639, 4V88|1|A6|U|694, 4V88|1|A6|C|696, 4V88|1|A6|U|742, 4V88|1|A6|U|813, 4V88|1|A6|G|815, 4V88|1|A6|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_02711.1

Basepair signature

cWW-cWW-F-F-F-cWW-cSH-F-F-tWW-F-cWW-cWW-cWW-F-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4V88|1|A6|A|636
4V88|1|A6|C|637
4V88|1|A6|U|638
4V88|1|A6|U|639
4V88|1|A6|U|640
4V88|1|A6|G|641
*
4V88|1|A6|U|693
4V88|1|A6|U|694
4V88|1|A6|U|695
4V88|1|A6|C|696
4V88|1|A6|C|697
4V88|1|A6|U|698
*
4V88|1|A6|A|740
4V88|1|A6|C|741
4V88|1|A6|U|742
4V88|1|A6|U|743
4V88|1|A6|U|744
*
4V88|1|A6|A|807
4V88|1|A6|U|808
4V88|1|A6|A|809
4V88|1|A6|G|810
4V88|1|A6|A|811
4V88|1|A6|A|812
4V88|1|A6|U|813
4V88|1|A6|A|814
4V88|1|A6|G|815
4V88|1|A6|G|816
4V88|1|A6|A|817
*
4V88|1|A6|U|854
4V88|1|A6|A|855
4V88|1|A6|A|856
4V88|1|A6|U|857
4V88|1|A6|G|858
4V88|1|A6|A|859
4V88|1|A6|U|860

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CE

40S ribosomal protein S4-A

Chain CH

40S ribosomal protein S7-A

Chain CL

40S ribosomal protein S11-A

Chain CN

40S ribosomal protein S13

Chain CW

40S ribosomal protein S22-A

Chain DR

60S ribosomal protein L19-A