J5_4V89_002

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V89_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0695

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V89|1|AA|C|36
4V89|1|AA|U|37
4V89|1|AA|G|38
4V89|1|AA|G|39
*
4V89|1|AA|C|403
4V89|1|AA|G|404
4V89|1|AA|U|405
4V89|1|AA|G|406
*
4V89|1|AA|C|436
4V89|1|AA|U|437
4V89|1|AA|U|438
4V89|1|AA|U|439
4V89|1|AA|C|440
4V89|1|AA|A|441
4V89|1|AA|G|442
*
4V89|1|AA|C|492
4V89|1|AA|A|493
4V89|1|AA|G|494
4V89|1|AA|A|495
4V89|1|AA|A|496
4V89|1|AA|G|497
4V89|1|AA|A|498
4V89|1|AA|A|499
4V89|1|AA|G|500
*
4V89|1|AA|C|545
4V89|1|AA|A|546
4V89|1|AA|A|547
4V89|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12

Chain AW

Peptide chain release factor 3