J5_4V89_004

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V89|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V89_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0739

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V89|1|BA|C|47
4V89|1|BA|G|48
4V89|1|BA|A|49
4V89|1|BA|U|50
4V89|1|BA|G|51
4V89|1|BA|A|52
4V89|1|BA|A|53
4V89|1|BA|G|54
*
4V89|1|BA|C|116
4V89|1|BA|G|117
4V89|1|BA|A|118
4V89|1|BA|A|119
4V89|1|BA|U|120
4V89|1|BA|G|121
*
4V89|1|BA|C|130
4V89|1|BA|A|131
*
4V89|1|BA|U|148
4V89|1|BA|A|149
4V89|1|BA|U|150
*
4V89|1|BA|A|176
4V89|1|BA|G|177
4V89|1|BA|G|178

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L34