3D structure

PDB id
4V8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUAAAC*GGGUCGGG*CGAGUAC*GGAAUCUG*UAAG
Length
33 nucleotides
Bulged bases
4V8A|1|AA|G|272|||A, 4V8A|1|AA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V8A|1|AA|C|268
4V8A|1|AA|U|269
4V8A|1|AA|A|270
4V8A|1|AA|A|271
4V8A|1|AA|A|271|||A
4V8A|1|AA|C|271|||B
*
4V8A|1|AA|G|271|||V
4V8A|1|AA|G|271|||W
4V8A|1|AA|G|271|||X
4V8A|1|AA|U|271|||Y
4V8A|1|AA|C|271|||Z
4V8A|1|AA|G|272
4V8A|1|AA|G|272|||A
4V8A|1|AA|G|272|||B
*
4V8A|1|AA|C|366
4V8A|1|AA|G|370
4V8A|1|AA|A|371
4V8A|1|AA|G|372
4V8A|1|AA|U|373
4V8A|1|AA|A|374
4V8A|1|AA|C|375
*
4V8A|1|AA|G|399
4V8A|1|AA|G|400
4V8A|1|AA|A|401
4V8A|1|AA|A|402
4V8A|1|AA|U|403
4V8A|1|AA|C|404
4V8A|1|AA|U|405
4V8A|1|AA|G|406
*
4V8A|1|AA|U|421
4V8A|1|AA|A|422
4V8A|1|AA|A|423
4V8A|1|AA|G|424

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain A1
50S ribosomal protein L28
Chain AI
50S ribosomal protein L9

Coloring options:

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