J5_4V8A_002

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAAC*GGGUCGGG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V8A|1|AA|G|272|||A, 4V8A|1|AA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8A|1|AA|C|268
4V8A|1|AA|U|269
4V8A|1|AA|A|270
4V8A|1|AA|A|271
4V8A|1|AA|A|271|||A
4V8A|1|AA|C|271|||B
*
4V8A|1|AA|G|271|||V
4V8A|1|AA|G|271|||W
4V8A|1|AA|G|271|||X
4V8A|1|AA|U|271|||Y
4V8A|1|AA|C|271|||Z
4V8A|1|AA|G|272
4V8A|1|AA|G|272|||A
4V8A|1|AA|G|272|||B
*
4V8A|1|AA|C|366
4V8A|1|AA|G|370
4V8A|1|AA|A|371
4V8A|1|AA|G|372
4V8A|1|AA|U|373
4V8A|1|AA|A|374
4V8A|1|AA|C|375
*
4V8A|1|AA|G|399
4V8A|1|AA|G|400
4V8A|1|AA|A|401
4V8A|1|AA|A|402
4V8A|1|AA|U|403
4V8A|1|AA|C|404
4V8A|1|AA|U|405
4V8A|1|AA|G|406
*
4V8A|1|AA|U|421
4V8A|1|AA|A|422
4V8A|1|AA|A|423
4V8A|1|AA|G|424

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AI

50S ribosomal protein L9