J5_4V8A_019

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGG*CUUGG*CCUGAACC*GGGUAAUAG*CGAG

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8A|1|DA|C|36
4V8A|1|DA|U|37
4V8A|1|DA|G|38
4V8A|1|DA|G|39
*
4V8A|1|DA|C|403
4V8A|1|DA|U|404
4V8A|1|DA|U|405
4V8A|1|DA|G|406
4V8A|1|DA|G|407
*
4V8A|1|DA|C|435
4V8A|1|DA|C|436
4V8A|1|DA|U|437
4V8A|1|DA|G|438
4V8A|1|DA|A|439
4V8A|1|DA|A|441
4V8A|1|DA|C|442
4V8A|1|DA|C|443
*
4V8A|1|DA|G|491
4V8A|1|DA|G|492
4V8A|1|DA|G|493
4V8A|1|DA|U|494
4V8A|1|DA|A|495
4V8A|1|DA|A|496
4V8A|1|DA|U|498
4V8A|1|DA|A|499
4V8A|1|DA|G|500
*
4V8A|1|DA|C|545
4V8A|1|DA|G|546
4V8A|1|DA|A|547
4V8A|1|DA|G|548

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S4

Chain DL

30S ribosomal protein S12