J5_4V8B_005

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V8B|1|BA|U|271|||C, 4V8B|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8B|1|BA|C|268
4V8B|1|BA|U|269
4V8B|1|BA|A|270
4V8B|1|BA|A|270|||A
4V8B|1|BA|A|270|||B
4V8B|1|BA|C|270|||C
*
4V8B|1|BA|G|270|||W
4V8B|1|BA|G|270|||X
4V8B|1|BA|G|270|||Y
4V8B|1|BA|U|270|||Z
4V8B|1|BA|C|271|||A
4V8B|1|BA|G|271|||B
4V8B|1|BA|U|271|||C
4V8B|1|BA|G|271
*
4V8B|1|BA|C|366
4V8B|1|BA|G|370
4V8B|1|BA|A|371
4V8B|1|BA|G|372
4V8B|1|BA|U|373
4V8B|1|BA|A|374
4V8B|1|BA|C|375
*
4V8B|1|BA|G|399
4V8B|1|BA|G|400
4V8B|1|BA|A|401
4V8B|1|BA|A|402
4V8B|1|BA|U|403
4V8B|1|BA|C|404
4V8B|1|BA|U|405
4V8B|1|BA|G|406
*
4V8B|1|BA|U|421
4V8B|1|BA|A|422
4V8B|1|BA|A|423
4V8B|1|BA|G|424

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BK

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28