J5_4V8D_021

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAACG*CGAAAAG

Length

28 nucleotides

Bulged bases

4V8D|1|DA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8D|1|DA|C|601
4V8D|1|DA|G|602
4V8D|1|DA|A|603
4V8D|1|DA|G|604
*
4V8D|1|DA|C|624
4V8D|1|DA|G|625
4V8D|1|DA|U|626
4V8D|1|DA|A|627
4V8D|1|DA|G|628
*
4V8D|1|DA|C|635
4V8D|1|DA|G|636
4V8D|1|DA|A|637
4V8D|1|DA|G|638
*
4V8D|1|DA|C|650
4V8D|1|DA|G|651
4V8D|1|DA|C|652
4V8D|1|DA|A|653
4V8D|1|DA|A|654
4V8D|1|DA|A|654|||A
4V8D|1|DA|C|654|||B
4V8D|1|DA|G|654|||C
*
4V8D|1|DA|C|654|||R
4V8D|1|DA|G|654|||S
4V8D|1|DA|A|654|||T
4V8D|1|DA|A|654|||U
4V8D|1|DA|A|654|||V
4V8D|1|DA|A|655
4V8D|1|DA|G|656

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DF

50S ribosomal protein L4

Chain DO

50S ribosomal protein L15