J5_4V8D_025

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUC*GAG*CCG*CUUCG*CC

Length

17 nucleotides

Bulged bases

4V8D|1|AB|U|8, 4V8D|1|AB|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8D_025 not in the Motif Atlas

Homologous match to J5_4WZD_022

Geometric discrepancy: 0.3594

The information below is about J5_4WZD_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70787.1

Basepair signature

cWW-cWW-cWW-F-F-cWW-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

4V8D|1|AB|G|7
4V8D|1|AB|U|8
4V8D|1|AB|U|9
4V8D|1|AB|C|10
*
4V8D|1|AB|G|26
4V8D|1|AB|A|27
4V8D|1|AB|G|28
*
4V8D|1|AB|C|44
4V8D|1|AB|C|45
4V8D|1|AB|G|46
*
4V8D|1|AB|C|54
4V8D|1|AB|U|55
4V8D|1|AB|U|56
4V8D|1|AB|C|57
4V8D|1|AB|G|58
*
4V8D|1|AB|C|74
4V8D|1|AB|C|75

Current chains

Chain AB

TRNA-TYR

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA