J5_4V8F_002

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V8F|1|AA|U|271|||C, 4V8F|1|AA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|AA|C|268
4V8F|1|AA|U|269
4V8F|1|AA|A|270
4V8F|1|AA|A|270|||A
4V8F|1|AA|A|270|||B
4V8F|1|AA|C|270|||C
*
4V8F|1|AA|G|270|||W
4V8F|1|AA|G|270|||X
4V8F|1|AA|G|270|||Y
4V8F|1|AA|U|270|||Z
4V8F|1|AA|C|271|||A
4V8F|1|AA|G|271|||B
4V8F|1|AA|U|271|||C
4V8F|1|AA|G|271
*
4V8F|1|AA|C|366
4V8F|1|AA|G|370
4V8F|1|AA|A|371
4V8F|1|AA|G|372
4V8F|1|AA|U|373
4V8F|1|AA|A|374
4V8F|1|AA|C|375
*
4V8F|1|AA|G|399
4V8F|1|AA|G|400
4V8F|1|AA|A|401
4V8F|1|AA|A|402
4V8F|1|AA|U|403
4V8F|1|AA|C|404
4V8F|1|AA|U|405
4V8F|1|AA|G|406
*
4V8F|1|AA|U|421
4V8F|1|AA|A|422
4V8F|1|AA|A|423
4V8F|1|AA|G|424

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AK

50S ribosomal protein L9

Chain AZ

50S ribosomal protein L28