J5_4V8F_002
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 4V8F|1|AA|U|271|||C, 4V8F|1|AA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8F|1|AA|C|268
4V8F|1|AA|U|269
4V8F|1|AA|A|270
4V8F|1|AA|A|270|||A
4V8F|1|AA|A|270|||B
4V8F|1|AA|C|270|||C
*
4V8F|1|AA|G|270|||W
4V8F|1|AA|G|270|||X
4V8F|1|AA|G|270|||Y
4V8F|1|AA|U|270|||Z
4V8F|1|AA|C|271|||A
4V8F|1|AA|G|271|||B
4V8F|1|AA|U|271|||C
4V8F|1|AA|G|271
*
4V8F|1|AA|C|366
4V8F|1|AA|G|370
4V8F|1|AA|A|371
4V8F|1|AA|G|372
4V8F|1|AA|U|373
4V8F|1|AA|A|374
4V8F|1|AA|C|375
*
4V8F|1|AA|G|399
4V8F|1|AA|G|400
4V8F|1|AA|A|401
4V8F|1|AA|A|402
4V8F|1|AA|U|403
4V8F|1|AA|C|404
4V8F|1|AA|U|405
4V8F|1|AA|G|406
*
4V8F|1|AA|U|421
4V8F|1|AA|A|422
4V8F|1|AA|A|423
4V8F|1|AA|G|424
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
- Chain AK
- 50S ribosomal protein L9
- Chain AZ
- 50S ribosomal protein L28
Coloring options: