J5_4V8F_005

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAAC*GAAAAG

Length

26 nucleotides

Bulged bases

4V8F|1|AA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|AA|C|601
4V8F|1|AA|G|602
4V8F|1|AA|A|603
4V8F|1|AA|G|604
*
4V8F|1|AA|C|624
4V8F|1|AA|G|625
4V8F|1|AA|U|626
4V8F|1|AA|A|627
4V8F|1|AA|G|628
*
4V8F|1|AA|C|635
4V8F|1|AA|G|636
4V8F|1|AA|A|637
4V8F|1|AA|G|638
*
4V8F|1|AA|C|650
4V8F|1|AA|G|651
4V8F|1|AA|C|652
4V8F|1|AA|A|653
4V8F|1|AA|A|654
4V8F|1|AA|A|654|||A
4V8F|1|AA|C|654|||B
*
4V8F|1|AA|G|654|||S
4V8F|1|AA|A|654|||T
4V8F|1|AA|A|654|||U
4V8F|1|AA|A|654|||V
4V8F|1|AA|A|655
4V8F|1|AA|G|656

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A8

50S ribosomal protein L35

Chain AF

50S ribosomal protein L4

Chain AO

50S ribosomal protein L15