J5_4V8F_006
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 4V8F|1|AA|G|1758, 4V8F|1|AA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8F_006 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.095
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8F|1|AA|G|1674
4V8F|1|AA|C|1675
4V8F|1|AA|A|1676
4V8F|1|AA|A|1677
4V8F|1|AA|G|1678
4V8F|1|AA|U|1679
4V8F|1|AA|U|1680
4V8F|1|AA|G|1681
4V8F|1|AA|G|1682
*
4V8F|1|AA|U|1706
4V8F|1|AA|G|1707
*
4V8F|1|AA|C|1751
4V8F|1|AA|C|1752
*
4V8F|1|AA|G|1756
4V8F|1|AA|U|1757
4V8F|1|AA|G|1758
4V8F|1|AA|A|1759
4V8F|1|AA|A|1760
4V8F|1|AA|C|1761
4V8F|1|AA|A|1762
4V8F|1|AA|G|1763
4V8F|1|AA|G|1764
*
4V8F|1|AA|C|1988
4V8F|1|AA|G|1989
4V8F|1|AA|C|1990
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
- Chain AE
- 50S ribosomal protein L3
- Chain AN
- 50S ribosomal protein L14
- Chain AR
- 50S ribosomal protein L19
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
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