J5_4V8F_007
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 4V8F|1|AA|A|2448, 4V8F|1|AA|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8F|1|AA|A|2057
4V8F|1|AA|A|2058
4V8F|1|AA|A|2059
4V8F|1|AA|A|2060
4V8F|1|AA|G|2061
4V8F|1|AA|A|2062
4V8F|1|AA|C|2063
4V8F|1|AA|C|2064
*
4V8F|1|AA|G|2446
4V8F|1|AA|G|2447
4V8F|1|AA|A|2448
4V8F|1|AA|U|2449
4V8F|1|AA|A|2450
4V8F|1|AA|A|2451
4V8F|1|AA|C|2452
4V8F|1|AA|A|2453
*
4V8F|1|AA|U|2500
4V8F|1|AA|C|2501
4V8F|1|AA|G|2502
4V8F|1|AA|A|2503
4V8F|1|AA|U|2504
4V8F|1|AA|G|2505
4V8F|1|AA|U|2506
4V8F|1|AA|C|2507
*
4V8F|1|AA|G|2582
4V8F|1|AA|G|2583
4V8F|1|AA|U|2584
4V8F|1|AA|U|2585
4V8F|1|AA|C|2586
4V8F|1|AA|A|2587
4V8F|1|AA|G|2588
*
4V8F|1|AA|C|2606
4V8F|1|AA|G|2607
4V8F|1|AA|G|2608
4V8F|1|AA|U|2609
4V8F|1|AA|C|2610
4V8F|1|AA|U|2611
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
- Chain A5
- 50S ribosomal protein L32
- Chain AD
- 50S ribosomal protein L2
- Chain AE
- 50S ribosomal protein L3
- Chain AF
- 50S ribosomal protein L4
- Chain AP
- 50S ribosomal protein L16
- Chain AS
- 50S ribosomal protein L22
- Chain BB
- TRNA-TYR
- Chain BC
- Transfer RNA; tRNA
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