J5_4V8F_015

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUC*GAG*CCG*CUUCG*CC

Length

17 nucleotides

Bulged bases

4V8F|1|CD|U|8, 4V8F|1|CD|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8F_015 not in the Motif Atlas

Homologous match to J5_4WZD_022

Geometric discrepancy: 0.2165

The information below is about J5_4WZD_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70787.1

Basepair signature

cWW-cWW-cWW-F-F-cWW-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

4V8F|1|CD|G|7
4V8F|1|CD|U|8
4V8F|1|CD|U|9
4V8F|1|CD|C|10
*
4V8F|1|CD|G|26
4V8F|1|CD|A|27
4V8F|1|CD|G|28
*
4V8F|1|CD|C|44
4V8F|1|CD|C|45
4V8F|1|CD|G|46
*
4V8F|1|CD|C|54
4V8F|1|CD|U|55
4V8F|1|CD|U|56
4V8F|1|CD|C|57
4V8F|1|CD|G|58
*
4V8F|1|CD|C|74
4V8F|1|CD|C|75

Current chains

Chain CD

TRNA-TYR

Nearby chains

Chain CJ

30S RIBOSOMAL PROTEIN S7

Chain CN

30S RIBOSOMAL PROTEIN S11

Chain D6

50S ribosomal protein L33