J5_4V8F_025
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUC*GAG*CCG*CUUCG*CC
- Length
- 17 nucleotides
- Bulged bases
- 4V8F|1|CB|U|8, 4V8F|1|CB|U|9, 4V8F|1|CB|C|57
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8F|1|CB|G|7
4V8F|1|CB|U|8
4V8F|1|CB|U|9
4V8F|1|CB|C|10
*
4V8F|1|CB|G|26
4V8F|1|CB|A|27
4V8F|1|CB|G|28
*
4V8F|1|CB|C|44
4V8F|1|CB|C|45
4V8F|1|CB|G|46
*
4V8F|1|CB|C|54
4V8F|1|CB|U|55
4V8F|1|CB|U|56
4V8F|1|CB|C|57
4V8F|1|CB|G|58
*
4V8F|1|CB|C|74
4V8F|1|CB|C|75
Current chains
- Chain CB
- TRNA-TYR
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: