J5_4V8H_017

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

4V8H|1|DA|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8H|1|DA|C|601
4V8H|1|DA|G|602
4V8H|1|DA|A|603
4V8H|1|DA|G|604
*
4V8H|1|DA|C|624
4V8H|1|DA|G|625
4V8H|1|DA|U|626
4V8H|1|DA|A|627
4V8H|1|DA|G|628
*
4V8H|1|DA|C|635
4V8H|1|DA|G|636
4V8H|1|DA|A|637
4V8H|1|DA|G|638
*
4V8H|1|DA|C|650
4V8H|1|DA|G|651
4V8H|1|DA|C|652
4V8H|1|DA|A|652|||A
4V8H|1|DA|A|652|||B
4V8H|1|DA|G|652|||C
*
4V8H|1|DA|C|652|||V
4V8H|1|DA|A|653
4V8H|1|DA|A|654
4V8H|1|DA|A|655
4V8H|1|DA|G|656

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D8

50S Ribosomal Protein L35

Chain DF

50S Ribosomal Protein L4

Chain DP

50S Ribosomal Protein L15