J5_4V8I_001

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGGCG*CGCUUG*CUGAAC*GGUAAUAG*CGAG

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8I|1|AA|C|36
4V8I|1|AA|U|37
4V8I|1|AA|G|38
4V8I|1|AA|G|39
4V8I|1|AA|C|40
4V8I|1|AA|G|41
*
4V8I|1|AA|C|401
4V8I|1|AA|G|402
4V8I|1|AA|C|403
4V8I|1|AA|U|404
4V8I|1|AA|U|405
4V8I|1|AA|G|406
*
4V8I|1|AA|C|436
4V8I|1|AA|U|437
4V8I|1|AA|G|438
4V8I|1|AA|A|439
4V8I|1|AA|A|441
4V8I|1|AA|C|442
*
4V8I|1|AA|G|492
4V8I|1|AA|G|493
4V8I|1|AA|U|494
4V8I|1|AA|A|495
4V8I|1|AA|A|496
4V8I|1|AA|U|498
4V8I|1|AA|A|499
4V8I|1|AA|G|500
*
4V8I|1|AA|C|545
4V8I|1|AA|G|546
4V8I|1|AA|A|547
4V8I|1|AA|G|548

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AD

30S Ribosomal Protein S4

Chain AL

30S Ribosomal Protein S12

Chain AP

30S Ribosomal Protein S16