J5_4V8I_014

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V8I|1|DA|U|272|||A, 4V8I|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8I|1|DA|C|268
4V8I|1|DA|U|269
4V8I|1|DA|A|270
4V8I|1|DA|A|271
4V8I|1|DA|A|271|||A
4V8I|1|DA|C|271|||B
*
4V8I|1|DA|G|271|||V
4V8I|1|DA|G|271|||W
4V8I|1|DA|G|271|||X
4V8I|1|DA|U|271|||Y
4V8I|1|DA|C|271|||Z
4V8I|1|DA|G|272
4V8I|1|DA|U|272|||A
4V8I|1|DA|G|272|||B
*
4V8I|1|DA|C|366
4V8I|1|DA|G|370
4V8I|1|DA|A|371
4V8I|1|DA|G|372
4V8I|1|DA|U|373
4V8I|1|DA|A|374
4V8I|1|DA|C|375
*
4V8I|1|DA|G|399
4V8I|1|DA|G|400
4V8I|1|DA|A|401
4V8I|1|DA|A|402
4V8I|1|DA|U|403
4V8I|1|DA|C|404
4V8I|1|DA|U|405
4V8I|1|DA|G|406
*
4V8I|1|DA|U|421
4V8I|1|DA|A|422
4V8I|1|DA|A|423
4V8I|1|DA|G|424

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S Ribosomal Protein L28

Chain DI

50S Ribosomal Protein L9