J5_4V8N_009

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8N_009 not in the Motif Atlas

Homologous match to J5_6CZR_007

Geometric discrepancy: 0.1624

The information below is about J5_6CZR_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|CA|C|36
4V8N|1|CA|U|37
4V8N|1|CA|G|38
4V8N|1|CA|G|39
*
4V8N|1|CA|C|403
4V8N|1|CA|U|404
4V8N|1|CA|U|405
4V8N|1|CA|G|406
*
4V8N|1|CA|C|436
4V8N|1|CA|U|437
4V8N|1|CA|G|438
4V8N|1|CA|A|439
4V8N|1|CA|A|441
4V8N|1|CA|C|442
4V8N|1|CA|C|443
*
4V8N|1|CA|G|491
4V8N|1|CA|G|492
4V8N|1|CA|G|493
4V8N|1|CA|U|494
4V8N|1|CA|A|495
4V8N|1|CA|A|496
4V8N|1|CA|U|498
4V8N|1|CA|A|499
4V8N|1|CA|G|500
*
4V8N|1|CA|C|545
4V8N|1|CA|G|546
4V8N|1|CA|A|547
4V8N|1|CA|G|548

Current chains

Chain CA

16S RRNA

Nearby chains

Chain BI

50S RIBOSOMAL PROTEIN L9

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CL

30S RIBOSOMAL PROTEIN S12