J5_4V8Q_009
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4V8Q|1|BA|A|109, 4V8Q|1|BA|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8Q_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0907
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8Q|1|BA|C|58
4V8Q|1|BA|A|59
4V8Q|1|BA|A|60
4V8Q|1|BA|G|61
*
4V8Q|1|BA|C|106
4V8Q|1|BA|G|107
4V8Q|1|BA|G|108
4V8Q|1|BA|A|109
4V8Q|1|BA|C|110
4V8Q|1|BA|G|111
4V8Q|1|BA|G|112
4V8Q|1|BA|G|113
*
4V8Q|1|BA|C|314
4V8Q|1|BA|A|315
4V8Q|1|BA|G|316
*
4V8Q|1|BA|C|337
4V8Q|1|BA|A|338
4V8Q|1|BA|C|339
*
4V8Q|1|BA|G|350
4V8Q|1|BA|G|351
4V8Q|1|BA|C|352
4V8Q|1|BA|A|353
4V8Q|1|BA|G|354
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AO
- 50S RIBOSOMAL PROTEIN L14
- Chain AT
- 50S RIBOSOMAL PROTEIN L19
- Chain BP
- 30S RIBOSOMAL PROTEIN S16
- Chain BT
- 30S RIBOSOMAL PROTEIN S20
- Chain BZ
- ELONGATION FACTOR TU
Coloring options: