J5_4V8X_004

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUAAAC*GGGUCGG*CGAGUAC*GGAAUCUG*UAAG

Length

32 nucleotides

Bulged bases

4V8X|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8X|1|BA|C|268
4V8X|1|BA|U|269
4V8X|1|BA|A|270
4V8X|1|BA|A|271
4V8X|1|BA|A|271|||A
4V8X|1|BA|C|271|||B
*
4V8X|1|BA|G|271|||V
4V8X|1|BA|G|271|||W
4V8X|1|BA|G|271|||X
4V8X|1|BA|U|271|||Y
4V8X|1|BA|C|271|||Z
4V8X|1|BA|G|272
4V8X|1|BA|G|272|||B
*
4V8X|1|BA|C|366
4V8X|1|BA|G|370
4V8X|1|BA|A|371
4V8X|1|BA|G|372
4V8X|1|BA|U|373
4V8X|1|BA|A|374
4V8X|1|BA|C|375
*
4V8X|1|BA|G|399
4V8X|1|BA|G|400
4V8X|1|BA|A|401
4V8X|1|BA|A|402
4V8X|1|BA|U|403
4V8X|1|BA|C|404
4V8X|1|BA|U|405
4V8X|1|BA|G|406
*
4V8X|1|BA|U|421
4V8X|1|BA|A|422
4V8X|1|BA|A|423
4V8X|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BI

50S RIBOSOMAL PROTEIN L9