J5_4V8Y_001

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

4V8Y|1|B2|A|541, 4V8Y|1|B2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B2|C|31
4V8Y|1|B2|U|32
4V8Y|1|B2|U|33
4V8Y|1|B2|G|34
4V8Y|1|B2|U|35
*
4V8Y|1|B2|A|473
4V8Y|1|B2|A|474
4V8Y|1|B2|A|475
4V8Y|1|B2|U|476
4V8Y|1|B2|A|477
4V8Y|1|B2|A|478
4V8Y|1|B2|C|479
*
4V8Y|1|B2|G|509
4V8Y|1|B2|G|510
4V8Y|1|B2|A|511
4V8Y|1|B2|A|512
4V8Y|1|B2|U|513
4V8Y|1|B2|G|514
4V8Y|1|B2|A|515
4V8Y|1|B2|G|516
*
4V8Y|1|B2|C|536
4V8Y|1|B2|G|537
4V8Y|1|B2|A|538
4V8Y|1|B2|G|539
4V8Y|1|B2|G|540
4V8Y|1|B2|A|541
4V8Y|1|B2|A|542
4V8Y|1|B2|C|543
4V8Y|1|B2|A|544
4V8Y|1|B2|A|545
4V8Y|1|B2|U|546
*
4V8Y|1|B2|A|592
4V8Y|1|B2|U|593
4V8Y|1|B2|A|594
4V8Y|1|B2|G|595

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A4

40S RIBOSOMAL PROTEIN S30-A

Chain AJ

40S RIBOSOMAL PROTEIN S9-A

Chain AX

40S RIBOSOMAL PROTEIN S23-A