Loop J5_4V8Y

3D structure

PDB id: 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU
Length: 44 nucleotides
Bulged bases: 4V8Y|1|B2|U|128, 4V8Y|1|B2|U|132, 4V8Y|1|B2|C|136, 4V8Y|1|B2|U|137, 4V8Y|1|B2|A|140, 4V8Y|1|B2|U|141, 4V8Y|1|B2|U|178
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V8Y|1|B2|A|124
4V8Y|1|B2|U|125
4V8Y|1|B2|A|126
4V8Y|1|B2|G|127
4V8Y|1|B2|U|128
4V8Y|1|B2|U|129
4V8Y|1|B2|C|130
4V8Y|1|B2|C|131
4V8Y|1|B2|U|132
4V8Y|1|B2|U|133
4V8Y|1|B2|U|134
4V8Y|1|B2|A|135
4V8Y|1|B2|C|136
4V8Y|1|B2|U|137
4V8Y|1|B2|A|138
4V8Y|1|B2|C|139
4V8Y|1|B2|A|140
4V8Y|1|B2|U|141
4V8Y|1|B2|G|142
4V8Y|1|B2|G|143
*
4V8Y|1|B2|C|172
4V8Y|1|B2|A|173
4V8Y|1|B2|U|174
4V8Y|1|B2|G|175
4V8Y|1|B2|C|176
4V8Y|1|B2|U|177
4V8Y|1|B2|U|178
4V8Y|1|B2|A|179
4V8Y|1|B2|A|180
4V8Y|1|B2|A|181
4V8Y|1|B2|A|182
*
4V8Y|1|B2|U|203
4V8Y|1|B2|G|204
*
4V8Y|1|B2|C|263
4V8Y|1|B2|G|264
4V8Y|1|B2|A|265
4V8Y|1|B2|A|266
4V8Y|1|B2|U|267
*
4V8Y|1|B2|A|288
4V8Y|1|B2|U|289
4V8Y|1|B2|G|290
4V8Y|1|B2|G|291
4V8Y|1|B2|U|292
4V8Y|1|B2|U|293

Current chains

Chain B2: 18S RIBOSOMAL RNA

Nearby chains

Chain AE: 40S RIBOSOMAL PROTEIN S4-A
Chain AG: 40S RIBOSOMAL PROTEIN S6-A
Chain AI: 40S RIBOSOMAL PROTEIN S8-A

J5_4V8Y_004