J5_4V8Y_006
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 4V8Y|1|B8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8Y_006 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0416
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8Y|1|B5|A|20
4V8Y|1|B5|G|21
4V8Y|1|B5|G|22
*
4V8Y|1|B8|C|35
4V8Y|1|B8|G|36
4V8Y|1|B8|A|37
4V8Y|1|B8|U|38
4V8Y|1|B8|G|39
4V8Y|1|B8|A|40
4V8Y|1|B8|A|41
4V8Y|1|B8|G|42
*
4V8Y|1|B8|U|102
4V8Y|1|B8|G|103
4V8Y|1|B8|A|104
4V8Y|1|B8|A|105
4V8Y|1|B8|C|106
4V8Y|1|B8|G|107
*
4V8Y|1|B8|C|115
4V8Y|1|B8|G|116
*
4V8Y|1|B8|C|137
4V8Y|1|B8|A|138
4V8Y|1|B8|U|139
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
- Chain B8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain BX
- 60S RIBOSOMAL PROTEIN L25
- Chain Bh
- 60S RIBOSOMAL PROTEIN L35-B
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
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