J5_4V8Y_007
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 4V8Y|1|B5|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8Y_007 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0388
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V8Y|1|B5|G|658
4V8Y|1|B5|G|659
4V8Y|1|B5|A|660
4V8Y|1|B5|G|661
4V8Y|1|B5|U|662
4V8Y|1|B5|C|663
*
4V8Y|1|B5|G|799
4V8Y|1|B5|G|800
4V8Y|1|B5|A|801
4V8Y|1|B5|C|802
*
4V8Y|1|B5|G|941
4V8Y|1|B5|U|942
4V8Y|1|B5|U|943
4V8Y|1|B5|C|944
*
4V8Y|1|B5|G|1375
4V8Y|1|B5|C|1376
*
4V8Y|1|B5|G|1431
4V8Y|1|B5|C|1432
4V8Y|1|B5|A|1433
4V8Y|1|B5|G|1434
4V8Y|1|B5|A|1435
4V8Y|1|B5|U|1436
4V8Y|1|B5|C|1437
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Be
- 60S RIBOSOMAL PROTEIN L32
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