J5_4V8Y_010

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU

Length

38 nucleotides

Bulged bases

4V8Y|1|B5|A|2401, 4V8Y|1|B5|A|2817, 4V8Y|1|B5|G|2874, 4V8Y|1|B5|U|2978, 4V8Y|1|B5|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B5|A|2399
4V8Y|1|B5|G|2400
4V8Y|1|B5|A|2401
4V8Y|1|B5|A|2402
4V8Y|1|B5|G|2403
4V8Y|1|B5|A|2404
4V8Y|1|B5|C|2405
4V8Y|1|B5|C|2406
*
4V8Y|1|B5|G|2815
4V8Y|1|B5|G|2816
4V8Y|1|B5|A|2817
4V8Y|1|B5|U|2818
4V8Y|1|B5|A|2819
4V8Y|1|B5|A|2820
4V8Y|1|B5|C|2821
4V8Y|1|B5|U|2822
4V8Y|1|B5|G|2823
*
4V8Y|1|B5|C|2867
4V8Y|1|B5|U|2868
4V8Y|1|B5|U|2869
4V8Y|1|B5|C|2870
4V8Y|1|B5|G|2871
4V8Y|1|B5|A|2872
4V8Y|1|B5|U|2873
4V8Y|1|B5|G|2874
4V8Y|1|B5|U|2875
*
4V8Y|1|B5|G|2952
4V8Y|1|B5|U|2953
4V8Y|1|B5|U|2954
4V8Y|1|B5|U|2955
4V8Y|1|B5|A|2956
4V8Y|1|B5|G|2957
*
4V8Y|1|B5|U|2975
4V8Y|1|B5|A|2976
4V8Y|1|B5|G|2977
4V8Y|1|B5|U|2978
4V8Y|1|B5|U|2979
4V8Y|1|B5|U|2980

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BC

60S RIBOSOMAL PROTEIN L4-A

Chain Bb

60S RIBOSOMAL PROTEIN L29