J5_4V90_004

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V90|1|BA|U|272|||A, 4V90|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V90|1|BA|C|268
4V90|1|BA|U|269
4V90|1|BA|A|270
4V90|1|BA|A|271
4V90|1|BA|A|271|||A
4V90|1|BA|C|271|||B
*
4V90|1|BA|G|271|||V
4V90|1|BA|G|271|||W
4V90|1|BA|G|271|||X
4V90|1|BA|U|271|||Y
4V90|1|BA|C|271|||Z
4V90|1|BA|G|272
4V90|1|BA|U|272|||A
4V90|1|BA|G|272|||B
*
4V90|1|BA|C|366
4V90|1|BA|G|370
4V90|1|BA|A|371
4V90|1|BA|G|372
4V90|1|BA|U|373
4V90|1|BA|A|374
4V90|1|BA|C|375
*
4V90|1|BA|G|399
4V90|1|BA|G|400
4V90|1|BA|A|401
4V90|1|BA|A|402
4V90|1|BA|U|403
4V90|1|BA|C|404
4V90|1|BA|U|405
4V90|1|BA|G|406
*
4V90|1|BA|U|421
4V90|1|BA|A|422
4V90|1|BA|A|423
4V90|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28