Loop J5_4V92

3D structure

PDB id: 4V92 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Loop

Sequence: CUUGUCUCAAA*UGACAAUAAAUAACGAUAC*GUAAUUGGAAUGAG*CGAGGAACAAU*AUAG
Length: 59 nucleotides
Bulged bases: 4V92|1|A2|A|506, 4V92|1|A2|U|507, 4V92|1|A2|A|541, 4V92|1|A2|C|543, 4V92|1|A2|A|544
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V92|1|A2|C|31
4V92|1|A2|U|32
4V92|1|A2|U|33
4V92|1|A2|G|34
4V92|1|A2|U|35
4V92|1|A2|C|36
4V92|1|A2|U|37
4V92|1|A2|C|38
4V92|1|A2|A|39
4V92|1|A2|A|40
4V92|1|A2|A|41
*
4V92|1|A2|U|466
4V92|1|A2|G|467
4V92|1|A2|A|468
4V92|1|A2|C|469
4V92|1|A2|A|470
4V92|1|A2|A|471
4V92|1|A2|U|472
4V92|1|A2|A|473
4V92|1|A2|A|474
4V92|1|A2|A|475
4V92|1|A2|U|476
4V92|1|A2|A|477
4V92|1|A2|A|478
4V92|1|A2|C|479
4V92|1|A2|G|480
4V92|1|A2|A|481
4V92|1|A2|U|482
4V92|1|A2|A|483
4V92|1|A2|C|484
*
4V92|1|A2|G|503
4V92|1|A2|U|504
4V92|1|A2|A|505
4V92|1|A2|A|506
4V92|1|A2|U|507
4V92|1|A2|U|508
4V92|1|A2|G|509
4V92|1|A2|G|510
4V92|1|A2|A|511
4V92|1|A2|A|512
4V92|1|A2|U|513
4V92|1|A2|G|514
4V92|1|A2|A|515
4V92|1|A2|G|516
*
4V92|1|A2|C|536
4V92|1|A2|G|537
4V92|1|A2|A|538
4V92|1|A2|G|539
4V92|1|A2|G|540
4V92|1|A2|A|541
4V92|1|A2|A|542
4V92|1|A2|C|543
4V92|1|A2|A|544
4V92|1|A2|A|545
4V92|1|A2|U|546
*
4V92|1|A2|A|592
4V92|1|A2|U|593
4V92|1|A2|A|594
4V92|1|A2|G|595

Current chains

Chain A2: 18S RRNA

Nearby chains

Chain BJ: US4
Chain BX: US12
Chain Be: ES30

J5_4V92_002