J5_4V92_007

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAUC*GAUGGUU

Length

46 nucleotides

Bulged bases

4V92|1|A2|U|132, 4V92|1|A2|U|133, 4V92|1|A2|A|140, 4V92|1|A2|U|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V92|1|A2|A|124
4V92|1|A2|U|125
4V92|1|A2|A|126
4V92|1|A2|G|127
4V92|1|A2|U|128
4V92|1|A2|U|129
4V92|1|A2|C|130
4V92|1|A2|C|131
4V92|1|A2|U|132
4V92|1|A2|U|133
4V92|1|A2|U|134
4V92|1|A2|A|135
4V92|1|A2|C|136
4V92|1|A2|U|137
4V92|1|A2|A|138
4V92|1|A2|C|139
4V92|1|A2|A|140
4V92|1|A2|U|141
4V92|1|A2|G|142
4V92|1|A2|G|143
*
4V92|1|A2|C|172
4V92|1|A2|A|173
4V92|1|A2|U|174
4V92|1|A2|G|175
4V92|1|A2|C|176
4V92|1|A2|U|177
4V92|1|A2|U|178
4V92|1|A2|A|179
4V92|1|A2|A|180
4V92|1|A2|A|181
4V92|1|A2|A|182
*
4V92|1|A2|U|203
4V92|1|A2|G|204
*
4V92|1|A2|C|263
4V92|1|A2|G|264
4V92|1|A2|A|265
4V92|1|A2|A|266
4V92|1|A2|U|267
4V92|1|A2|C|268
*
4V92|1|A2|G|287
4V92|1|A2|A|288
4V92|1|A2|U|289
4V92|1|A2|G|290
4V92|1|A2|G|291
4V92|1|A2|U|292
4V92|1|A2|U|293

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BE

ES4

Chain BG

ES6

Chain BY

ES24