J5_4V9B_007

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAAC*GAAAAG

Length

26 nucleotides

Bulged bases

4V9B|1|BA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9B|1|BA|C|601
4V9B|1|BA|G|602
4V9B|1|BA|A|603
4V9B|1|BA|G|604
*
4V9B|1|BA|C|624
4V9B|1|BA|G|625
4V9B|1|BA|U|626
4V9B|1|BA|A|627
4V9B|1|BA|G|628
*
4V9B|1|BA|C|635
4V9B|1|BA|G|636
4V9B|1|BA|A|637
4V9B|1|BA|G|638
*
4V9B|1|BA|C|650
4V9B|1|BA|G|651
4V9B|1|BA|C|652
4V9B|1|BA|A|653
4V9B|1|BA|A|654
4V9B|1|BA|A|654|||A
4V9B|1|BA|C|654|||B
*
4V9B|1|BA|G|654|||S
4V9B|1|BA|A|654|||T
4V9B|1|BA|A|654|||U
4V9B|1|BA|A|654|||V
4V9B|1|BA|A|655
4V9B|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein L35

Chain BF

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15