J5_4V9D_001

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9D_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.086

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V9D|1|AA|C|36
4V9D|1|AA|U|37
4V9D|1|AA|G|38
4V9D|1|AA|G|39
*
4V9D|1|AA|C|403
4V9D|1|AA|G|404
4V9D|1|AA|U|405
4V9D|1|AA|G|406
*
4V9D|1|AA|C|436
4V9D|1|AA|U|437
4V9D|1|AA|U|438
4V9D|1|AA|U|439
4V9D|1|AA|C|440
*
4V9D|1|AA|G|497
4V9D|1|AA|A|498
4V9D|1|AA|A|499
4V9D|1|AA|G|500
*
4V9D|1|AA|C|545
4V9D|1|AA|A|546
4V9D|1|AA|A|547
4V9D|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12