J5_4V9F_001
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAUGAAG*CGAAUG*CU*ACAA*UGA
- Length
- 23 nucleotides
- Bulged bases
- 4V9F|1|0|U|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99180.1
- Basepair signature
- cWW-F-F-cHW-cWW-tSH-tHH-F-tHS-F-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V9F|1|0|U|43
4V9F|1|0|G|44
4V9F|1|0|A|45
4V9F|1|0|U|46
4V9F|1|0|G|47
4V9F|1|0|A|48
4V9F|1|0|A|49
4V9F|1|0|G|50
*
4V9F|1|0|C|111
4V9F|1|0|G|112
4V9F|1|0|A|113
4V9F|1|0|A|114
4V9F|1|0|U|115
4V9F|1|0|G|116
*
4V9F|1|0|C|124
4V9F|1|0|U|125
*
4V9F|1|0|A|129
4V9F|1|0|C|130
4V9F|1|0|A|131
4V9F|1|0|A|132
*
4V9F|1|0|U|146
4V9F|1|0|G|147
4V9F|1|0|A|148
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain M
- 50S ribosomal protein L15e
- Chain S
- 50S ribosomal protein L23P
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