J5_4V9F_005
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CAAG*CACAG*CGACAUG*CGC*GGGAG
- Length
- 24 nucleotides
- Bulged bases
- 4V9F|1|0|A|700, 4V9F|1|0|G|745
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V9F|1|0|C|658
4V9F|1|0|A|659
4V9F|1|0|A|660
4V9F|1|0|G|661
*
4V9F|1|0|C|685
4V9F|1|0|A|686
4V9F|1|0|C|687
4V9F|1|0|A|688
4V9F|1|0|G|689
*
4V9F|1|0|C|696
4V9F|1|0|G|697
4V9F|1|0|A|698
4V9F|1|0|C|699
4V9F|1|0|A|700
4V9F|1|0|U|701
4V9F|1|0|G|702
*
4V9F|1|0|C|726
4V9F|1|0|G|727
4V9F|1|0|C|728
*
4V9F|1|0|G|743
4V9F|1|0|G|744
4V9F|1|0|G|745
4V9F|1|0|A|746
4V9F|1|0|G|747
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4P
- Chain L
- 50S ribosomal protein L15P
- Chain O
- 50S ribosomal protein L18e
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