J5_4V9F_006

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

4V9F|1|0|G|1814, 4V9F|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V9F|1|0|G|1752
4V9F|1|0|C|1753
4V9F|1|0|A|1754
4V9F|1|0|A|1755
4V9F|1|0|G|1756
4V9F|1|0|U|1757
4V9F|1|0|U|1758
4V9F|1|0|A|1759
4V9F|1|0|G|1760
*
4V9F|1|0|U|1784
4V9F|1|0|G|1785
*
4V9F|1|0|U|1807
4V9F|1|0|C|1808
*
4V9F|1|0|G|1812
4V9F|1|0|U|1813
4V9F|1|0|G|1814
4V9F|1|0|A|1815
4V9F|1|0|C|1816
4V9F|1|0|U|1817
4V9F|1|0|C|1818
4V9F|1|0|G|1819
4V9F|1|0|G|1820
*
4V9F|1|0|C|2029
4V9F|1|0|A|2030
4V9F|1|0|C|2031

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e